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This analysis is repeated as the mass spectrometer goes through the full mass range, which facilitates systematic measurement of all peptide ions regardless of their intensity and overcomes the precursor selection problem of DDA

doi: 10.1159/000505321

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Protein identification and data analysis Mass spectra for the discovery cohort DDA analysis were searched against a Uniprot Homo sapiens sequence database (UniProt Reference Proteome Proteome ID UP000005640 93634 entries 2018.04) using the search engine Andromeda integrated into the MaxQuant software (version 1.6.3.4) 55

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